Please cite this paper if NLStradamus was useful for your studies:
Nguyen Ba AN, Pogoutse A, Provart N, Moses AM. NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction. BMC Bioinformatics. 2009 Jun 29;10(1):202.
- Program may resolve in an error if a large .fasta file is sent for prediction when images or graphics are desired. Please only use the table display when using large predictions. (>100 sequences)
- A standalone of the program is available here.
- Notice: NLStradamus is not a predictor of nuclear proteins; although better than random, it is a very poor classifier of nuclear proteins. Comparative approaches should be used for this problem. NLStradamus predicts NLSs in nuclear proteins that are transported by the import machinery of the cell.
- Click here for general help.
HMM state emission and transition frequencies.
Prediction Cutoff (]0,1])
A table that you can export with the start and stop positions of predicted NLS.
An image with the NLS boxed over a line representing the protein sequence.
Only applicable to posterior probability. A graphical representation of its distribution.
Scroll down for predictions.
Revision r.9 - Last Updated on :
October 19 2012 09:40:27.