motif cluster

Clusters of protein motifs

Here are scripts to calculate the statistics described in

Moses AM, Heriche JK, Durbin R. (2007) Spatial clustering of phosphorylation site recognition motifs can be exploited to predict the targets of cyclin-dependent kinase. Genome Biology. 8(2):R23.

These scripts are quite specific to the way we searched for clusters of CDK sites.  This software is still in development, so check back soon for more general functionality, display tools and etc.


May 17th 2007 - fixed a bug in the script (v1.01)