Last week we celebrated Alex’s time in the lab with a little farewell lunch. It’s an understatement to say that he will have a lasting impact on what we do. Hard to believe that when Alex started, no one in the lab had used a GPU! Beyond his work, Alex …
On Friday I had a very interesting chat with Jesse Bloom about his work that showed the mutations the coronavirus can acquire to evade antibodies and, perhaps, ultimately the immune response. Jessie showed that the virus can escape individual antibodies, probably natural immunity and even vaccine-induced immunity (in the worst …
I’ve always been fascinated with the concept of discovery in biology. Perhaps this is the reason why I work with microscopy images as my data of choice. The whole reason we have the word “cell” is because scientists placed corks and plants under microscopes in the 16th century and observed …
I tried to compile some of the important words/concepts we use for scholarly scientific writing. Of course, the positions and meanings of words are not scientific, but I think it gives some idea?
Here’s most of us having our a “pizza” lunch. We are saying farewell to Amy (again) and celebrating Gang and Dina’s projects. Obviously, this semester has been different. Still, I hope we’ve learned. It helped me to put our semester in perspective: Cambridge sent home its students in the 1660s, …
After many years of beautiful experiments, breakthroughs and graphic designs (e.g., here, here and here), Taraneh is leaving us. We commemorated with a lunch in December and we were lucky to have a special guest on hand. It was hard to say good bye, but we at least we got …
We have recently been working on classifying disordered regions for different functions and phenotypes using evolutionary signatures (and signatures comprised of “bulk” feature calculations from disordered sequences). The code and data related to this project currently lives at: https://github.com/taraneh-z/BADR! Check it out and let us know what you think. Hopefully …
Given all the changes and excitement around our lab in the last few months, Bob’s choice of theme for this year’s retreat seems more appropriate than ever! Our plans to go hiking were dashed by rainy weather, and we still had no trouble filling up the two days with challenging …
If anyone is interested in the raw z-scores underlying Figure 3 from our latest pre-print, you can find them here. You can open the .cdt file as you would any spreadsheet, or import it into TreeView to explore the clusters. UPDATE: The paper is now accepted for publication at eLife, …
I recently had the opportunity to present some of the super-exciting research progress we are making on image analysis and intrinsically disordered regions. I am making slides available here in case anyone wants to have a closer look.
